Statistical and Computational Genomics Lab Facility

Software
S.No. Open Software Commercial Software
1. Statistical Software
R-Software
CLC Genomics Workbench
2. Genomic Sequence Analysis Tools
BLAST
EMBOSS
Biology Workbench
NEB Cutter
ORF Finder
HMMER
Align
KALIn
T-coffee
Splign
BioEdit
FASTA
Genome workbench
CLUSTALW2
MUSCLE
T-Coffee
CLC Genomics Server
3. Protein Sequence Analysis Tools
MODELLER
SWISS-MODEL
Jperd
RASMOL
Jmol
Swiss PDB Viewer
Homology Modelling
NEXTGENe
4. Phylogenetic Analysis Tools
Phylip
Phylogeny.fr
Clustal
T-Coffee
PAML
BEAST
ClustalW
MEGA 4.0
Moyble
MapQTL 6.0
5. Quantitative Trait Loci
QTL Cartographer
EXP MapMaker
JoinMap 4.0